代表性论文
详细论文请参考https://orcid.org/0000-0001-9213-9832
Recent Years Referee Papers
1.Chen, Shouzhi,Tang, Zhenchao,You , Linlin,Tian, Yonghong*,Calvin Yu-Chian Chen*, DiConSite: A Unified Topology-Adaptive Architecture for Protein Binding Site Prediction Across Ligand Modalities,IEEE Transactions on Pattern Analysis and Machine Intelligence,2026
2.scProtoTransformer: Scalable Reference Mapping Across Molecules, Cells and Donors,Science Advances,2026
3.scTransMIL Bridges Patient-Level Disease States and Single-Cell Transcriptomics for Cancer Screening and Heterogeneity Inference,Nature Communications,2026
4.ZhenchaoTang,GuanxingChen,ShouzhiChen,HaohuaiHe,JiehuiHuang,TiejunDong,JunZhou,LuZhao,LinlinYou,Shouzhi Chen, Zhenchao Tang,Calvin Yu-Chian Chen*, Modal-NexT: Towards unified heterogeneous cellular data integration,Information Fusion,125, 2026, 103479.
5.Linlin You , Zihan Guo , Chau Yuen,Calvin Yu-Chian Chen, Yan Zhang*, H. Vincent Poor*, A framework reforming personalized Internet of Things by federated meta-learning,Nature Communications,2025,3739
6.Ziduo Yang , Yi-Ming Zhao, Xian Wang, Xiaoqing Liu, Xiuying Zhang, Yifan Li, Qiujie Lv,Calvin Yu-Chian Chen*, Lei Shen*, Scalable Crystal Structure Relaxation Using an Iteration-Free Deep Generative Model with Uncertainty Quantification,Nature Communications,2024,15, 8148(中科院一区,中科院Top, IF:17.3134)
7.Zhenchao Tang, Guanxing Chen, Shouzhi Chen, Jianhua Yao*,Linlin You*,Calvin Yu-Chian Chen*, Modal-nexus auto-encoder for multi-modality cellular data integration and imputation,Nature Communications,2024, 15, 1, 9021 (中科院一区,中科院Top, IF:17.3134)
8.Ziduo Yang, Weihe Zhong, Qiujie Lv, Tiejun Dong, Guanxing Chen,Calvin Yu-Chian Chen*, Interaction-Based Inductive Bias in Graph Neural Networks: Enhancing Protein-Ligand Binding Affinity Predictions from 3D Structures,IEEE Transactions on Pattern Analysis and Machine Intelligence,2024,46, 12, 8189-8208.(中科院一区,中科院Top, IF:24.3134)
9.Haohuai He, Bing He, Lei Guan, Yu Zhao, Feng Jiang, Guanxing Chen, Qingge Zhu,Calvin Yu-Chian Chen*, Ting Li*, Jianhua Yao*, De novo generation of SARS-CoV-2 antibody CDRH3 with a pre-trained generative large language model,Nature Communications,2024, 15:6867 (中科院一区,中科院Top, IF:17.3134)
10.Weihe Zhong#, Ziduo Yang#,Calvin Yu-Chian Chen*, Retrosynthesis prediction using an end-to-end graph neural network for molecular graph editing,Nature Communications,2023, 14, 3009 (中科院一区,中科院Top, IF:17.3134)
11.Qiujie Lv, Guanxing Chen, Haohuai He, Ziduo Yang, Lu Zhao, Kang Zhang,Calvin Yu-Chian Chen*, TCMBank-the largest TCM database provides deep learning-based Chinese-Western medicine exclusion prediction,Signal Transduction and Targeted Therapy,2023, 8, 127 (中科院一区,中科院Top, IF:81.2)
